RbindGseaResultList - prepare gsea result list for visualization funcitons GseaBubblePlot or GseaBarPlot; called by PlotFgseaList

RbindGseaResultList - prepare gsea result list for visualization funcitons GseaBubblePlot or GseaBarPlot; called by PlotFgseaList

Usage

RbindGseaResultList(
  gsea_result_list,
  NES_filter = -Inf,
  padj_filter = NULL,
  pval_filter = NULL
)

Arguments

gsea_result_list

result returned by RunFgseaOnRankList

NES_filter

filter out results below this NES

padj_filter

filter out results above this adjusted p threshold

Value

a dataframe of subsetted gsea results for all celltypes

Examples

if (FALSE) {
d = scglmmr::RbindGseaResultList(gsea_result_list = gsea1,NES_filter = -Inf,padj_filter = 0.2)
}