GetTidySummary - tidy data summary for a single cell type
Source:R/model_result_interaction.r
GetTidySummary.Rd
GetTidySummary - tidy data summary for a single cell type
Arguments
- av.exprs.list
- object returned by PseudobulkList (use average or first convert summed counts to cpm)
- celltype.index
- index of celltype to ret results see names of PseudobulkList object
- genes.use
- subet of genes to use
Examples
#' @examples
if (FALSE) {
gene_highlight = c("IRF1","TNFRSF17","ABL1")
mono = GetTidyCohort(av.exprs.list = av, celltype.index = 7, genes.use = gene_highlight)
PlotGeneDistCohort(merged_av_data = mono,
save_name = "mono_highlight_512",
save_path = figpath,
title = paste0(names(av[7]), "genesub" ),
height = 3.8, width = 4.5,
nrow = 2)
}