GetContrastResults - return results from a contrast fit on list of celltypes from RunVoomLimma using topTable

GetContrastResults - return results from a contrast fit on list of celltypes from RunVoomLimma using topTable

Usage

GetContrastResults(limma.fit.object.list, coefficient.number, contrast.name)

Arguments

limma.fit.object.list

the results returned by RunVoomLimma, to get coefficiennt from dreamMixedModel use GetContrastResultsRaw

coefficient.number

corresponds to the contrast, the nmber is in order of the contrast matrix

contrast.name

this does not have to match the exact contrast name used in the contrast matrix, it is here to force / remind the user to choose the correct contrast.

Value

a list of dataframes with contrast results indexed by cell type

Examples

if (FALSE) {
res = scglmmr::GetContrastResults(limma.fit.object.list = bl, coefficient.number = 1, contrast.name = "test")
}